PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G028800.1
Common NameB456_007G028800, LOC105801963
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 229aa    MW: 25655.4 Da    PI: 5.8694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G028800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1861110356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++ge
  Gorai.007G028800.1  61 YRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFETAEMAARAHDVAALTIKGE 110
                         9****998.**********854...6***********************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-3760123IPR001471AP2/ERF domain
PROSITE profilePS5103223.31460117IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2260119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-3360119IPR001471AP2/ERF domain
PRINTSPR003674.3E-116172IPR001471AP2/ERF domain
CDDcd000187.45E-3361119No hitNo description
PfamPF008476.7E-1261110IPR001471AP2/ERF domain
PRINTSPR003674.3E-118399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSTTEVPLIA ASETQSSSSP PENESAAEIF KSERTRKPET GNERKGKVKN DEIFEGKHQT  60
YRGVRMRQWG KWVSEIREPK KKSRIWLGTF ETAEMAARAH DVAALTIKGE SAYLNFPDSA  120
HELPRPRSSS PKDIQAAAAK AAAMSFTKSS HKHDDDGADQ LIPHRDSSSS SSPLINDDAF  180
IDLPDLLMHM NHRIDEFWVS FPWPVTATDD DIVENGFGYS ESRLREYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1855117263ATERF1
3gcc_A8e-1855117263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488784.11e-169PREDICTED: ethylene-responsive transcription factor ERF038-like isoform X1
SwissprotQ9ZQP39e-54ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A0D2QK731e-169A0A0D2QK73_G
STRINGfgenesh2_kg.4__1597__AT2G35700.13e-54(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-52ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]